This repository holds OpenBioMed, a Python deep learning toolkit for AI-empowered biomedicine. OpenBioMed provides easy access to multimodal biomedical data, i.e. molecular structures, transcriptomics, knowledge graphs and biomedical texts for molecules, proteins, and single cells. OpenBioMed supports a wide range of downstream applications, ranging from traditional AI drug discovery tasks to newly-emerged multimodal challenges.
Multimodal biomedical/molecular foundation models (BioMedGPT, MolFM, DrugFM, CellLM)
Multimodal datasets for molecules, proteins, single cells (molecular structures, transcriptomics, knowledge graphs)
Benchmark tasks (Molecule property prediction, drug-target interaction, protein-protein interaction, molecule generation, molecule QA etc)